bioinformatics - Category - John Lees' blog

bioinformatics

2024

Mini-review of 'Compressive Pangenomics Using Mutation-Annotated Networks' (PanMAN) 08-15

RapidNJ for M1 macs 04-05

2022

Using the new Microreact API 05-06

2021

Porting a bioinformatics tool to the web using WebAssembly, React and javascript 02-06

Thoughts on 'Whole genome phylogenies reflect the distributions of recombination rates for many bacterial species' 01-26

2019

Some thoughts on bioinformatics software maintenance 09-16

Paper summary – Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis 05-15

Readthedocs failing to build: module 'setuptools.build_meta' has no attribute '__legacy__' 04-26

Conservation of core genes in S. pneumoniae 04-17

Using unitigs for bacterial GWAS with pyseer 04-08

Paper summary – PopPUNK for bacterial epidemiology 01-25

2018

Creating a conda package with compilation and dependencies 10-15

Expression modules in S. pneumoniae 04-24

2017

Installing phyx without sudo 11-24

setup.py not found using pip install 11-20

Running BSLMM in gemma 08-23

Tanglegrams can be misleading 02-22

2016

Likelihood ratio test in SEER 10-27

Sorting a massive file 10-13

Running bugwas + gen files 09-08

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